Extensions
- OME-TIFF - Open Microscopy Environment TIFF
A specification of how to embed OME-XML metadata within a TIFF or BigTIFF image file.
Tools
- Bio-Formats
Bio-Formats reads proprietary microscopy image data and metadata, and converts them to OME-TIFF, a combination of TIFF and OME-XML.
- Fiji
Fiji is an image processing package that supports the OME data model for images
- OMERO
Repository software for organising, viewing, analysing and sharing biological microscopy images. It supports proprietary file formats but normalises to OME-TIFF/OME-XML.
Use Cases
- FlowRepository
A database of flow cytometry experiments where you can query and download data collected and annotated according to the MIBBI-registered MIFlowCyt standard.
- ISA Commons
A network of systems and projects that use the ISA-Tab file format, and/or are powered by components of the ISA software suite.
- ISA Commons
A network of systems and projects that use the ISA-Tab file format, and/or are powered by components of the ISA software suite.
- JCB Data Viewer
A repository for viewing and analysing multi-dimensional image data associated with articles published in The Journal of Cell Biology. Its native metadata format is OME-XML.
- The Cell: An Image Library
A resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. Its native metadata format for images is OME-XML.
Metadata standards
- OME-XML - Open Microscopy Environment XML
A metadata standard and data file format for biological light microscopy data.