Extensions
- isaconfig-diXa
- An extension of ISA-TAB for representing and sharing metadata about toxicogenomics experiments.
Tools
- PATRIC Download Tool
Tool for downloading data from PATRIC.
Use Cases
- dbEST - Expressed Sequence Tag Database
A repository-developed metadata schema for EST data in Genbank.
- ISA Commons
A network of systems and projects that use the ISA-Tab file format, and/or are powered by components of the ISA software suite.
- MVID Patient Registry
- The international registry of Microvillus Inclusion Disease (MVID) patients and associated MYO5B mutations.
- NEBC ISA Network BioInvestigationIndex
The NERC Environmental Bioinformatics Centre ISA Network's index of ISA-Tab and MIBBI-compliant environmental 'omics data.
- PRIDE - PRoteomics IDEntifications database
A centralized, MIBBI standards compliant, public data repository for proteomics data, post-translational modifications and supporting spectral evidence.
- WormQTL-HD
- A comprehensive web database for linking human disease to natural variation data in Caenorhabditis elegans
Metadata standards
- Genome Metadata
Descriptive data about single genomes within the Pathosystems Resource Integration Center.
- Repository-Developed Metadata Schemas
Some repositories have decided that current standards do not fit their metadata needs, and so have created their own requirements.